IL_8ZFG_165

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

8ZFG|1|a|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_165 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1377

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8ZFG|1|a|G|2737
8ZFG|1|a|A|2738
8ZFG|1|a|U|2739
8ZFG|1|a|A|2740
8ZFG|1|a|A|2741
8ZFG|1|a|G|2742
*
8ZFG|1|a|C|2762
8ZFG|1|a|G|2763
8ZFG|1|a|A|2764
8ZFG|1|a|A|2765
8ZFG|1|a|A|2766
8ZFG|1|a|C|2767

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain g

Large ribosomal subunit protein uL6

Chain i

Large ribosomal subunit protein uL13