IL_8ZFI_021

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUA*UUGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_021 not in the Motif Atlas

Geometric match to IL_4WSM_372

Geometric discrepancy: 0.3565

The information below is about IL_4WSM_372

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8ZFI|1|A|G|457
8ZFI|1|A|U|458
8ZFI|1|A|A|459
*
8ZFI|1|A|U|472
8ZFI|1|A|U|473
8ZFI|1|A|G|474
8ZFI|1|A|C|475

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16