IL_8ZFI_033

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

8ZFI|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_033 not in the Motif Atlas

Geometric match to IL_5J7L_033

Geometric discrepancy: 0.1773

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8ZFI|1|A|U|662
8ZFI|1|A|A|663
8ZFI|1|A|G|664
8ZFI|1|A|A|665
8ZFI|1|A|G|666
*
8ZFI|1|A|U|740
8ZFI|1|A|G|741
8ZFI|1|A|G|742
8ZFI|1|A|A|743

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S6, fully modified isoform

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18