IL_8ZFI_064

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_064 not in the Motif Atlas

Geometric match to IL_6DLR_003

Geometric discrepancy: 0.2782

The information below is about IL_6DLR_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8ZFI|1|A|U|1440
8ZFI|1|A|A|1441
8ZFI|1|A|G|1442
*
8ZFI|1|A|C|1460
8ZFI|1|A|G|1461

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20

Chain q

50S ribosomal protein L19