IL_8ZFI_078

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_078 not in the Motif Atlas

Geometric match to IL_5J7L_251

Geometric discrepancy: 0.0997

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8ZFI|1|b|C|239
8ZFI|1|b|C|240
8ZFI|1|b|A|241
8ZFI|1|b|G|242
8ZFI|1|b|U|243
8ZFI|1|b|A|244
8ZFI|1|b|G|245
*
8ZFI|1|b|C|253
8ZFI|1|b|G|254
8ZFI|1|b|A|255
8ZFI|1|b|A|256
8ZFI|1|b|C|257
8ZFI|1|b|G|258

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 7

50S ribosomal protein L35

Chain m

50S ribosomal protein L15