IL_8ZFI_090

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8ZFI|1|b|G|801, 8ZFI|1|b|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_090 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1055

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8ZFI|1|b|G|674
8ZFI|1|b|A|675
8ZFI|1|b|A|676
8ZFI|1|b|A|677
8ZFI|1|b|C|678
*
8ZFI|1|b|G|799
8ZFI|1|b|A|800
8ZFI|1|b|G|801
8ZFI|1|b|A|802
8ZFI|1|b|U|803
8ZFI|1|b|A|804
8ZFI|1|b|G|805
8ZFI|1|b|C|806

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain e

50S ribosomal protein L4

Chain m

50S ribosomal protein L15