IL_8ZFI_094

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACU*AGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_094 not in the Motif Atlas

Geometric match to IL_4V9F_028

Geometric discrepancy: 0.2666

The information below is about IL_4V9F_028

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

8ZFI|1|b|G|738
8ZFI|1|b|A|739
8ZFI|1|b|C|740
8ZFI|1|b|U|741
*
8ZFI|1|b|A|756
8ZFI|1|b|G|757
8ZFI|1|b|C|758

Current chains

Chain b

RNA (2903-MER)

Nearby chains