IL_8ZFI_100
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFI_100 not in the Motif Atlas
- Geometric match to IL_5J7L_272
- Geometric discrepancy: 0.1299
- The information below is about IL_5J7L_272
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
8ZFI|1|b|G|864
8ZFI|1|b|C|865
8ZFI|1|b|A|866
8ZFI|1|b|C|867
8ZFI|1|b|U|868
*
8ZFI|1|b|A|909
8ZFI|1|b|A|910
8ZFI|1|b|A|911
8ZFI|1|b|C|912
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain n
- 50S ribosomal protein L16
Coloring options: