IL_8ZFI_105

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_105 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.1336

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

8ZFI|1|b|U|1004
8ZFI|1|b|C|1005
8ZFI|1|b|C|1006
8ZFI|1|b|C|1007
8ZFI|1|b|A|1008
8ZFI|1|b|A|1009
8ZFI|1|b|A|1010
8ZFI|1|b|G|1011
*
8ZFI|1|b|C|1150
8ZFI|1|b|A|1151

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain k

50S ribosomal protein L13

Chain r

50S ribosomal protein L20