IL_8ZFI_109

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8ZFI|1|b|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_109 not in the Motif Atlas

Geometric match to IL_7A0S_038

Geometric discrepancy: 0.1511

The information below is about IL_7A0S_038

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8ZFI|1|b|G|1031
8ZFI|1|b|A|1032
8ZFI|1|b|U|1033
8ZFI|1|b|G|1034
*
8ZFI|1|b|C|1121
8ZFI|1|b|G|1122
8ZFI|1|b|C|1123

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 8

50S ribosomal protein L36

Chain a

5S ribosomal RNA; 5S rRNA

Chain n

50S ribosomal protein L16