IL_8ZFI_114

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8ZFI|1|b|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_114 not in the Motif Atlas

Geometric match to IL_5G4T_002

Geometric discrepancy: 0.1721

The information below is about IL_5G4T_002

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

8ZFI|1|b|C|1208
8ZFI|1|b|U|1209
8ZFI|1|b|G|1210
8ZFI|1|b|C|1211
8ZFI|1|b|G|1212
8ZFI|1|b|A|1213
8ZFI|1|b|A|1214
8ZFI|1|b|G|1215
*
8ZFI|1|b|U|1234
8ZFI|1|b|G|1235
8ZFI|1|b|G|1236
8ZFI|1|b|A|1237
8ZFI|1|b|G|1238

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain r

50S ribosomal protein L20