IL_8ZFI_144

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_144 not in the Motif Atlas

Geometric match to IL_5J7L_387

Geometric discrepancy: 0.1548

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8ZFI|1|b|U|1851
8ZFI|1|b|U|1852
8ZFI|1|b|A|1853
8ZFI|1|b|A|1854
8ZFI|1|b|U|1855
8ZFI|1|b|U|1856
8ZFI|1|b|G|1857
8ZFI|1|b|A|1858
8ZFI|1|b|U|1859
8ZFI|1|b|G|1860
*
8ZFI|1|b|U|1882
8ZFI|1|b|U|1883
8ZFI|1|b|G|1884
8ZFI|1|b|A|1885
8ZFI|1|b|U|1886
8ZFI|1|b|C|1887
8ZFI|1|b|G|1888
8ZFI|1|b|A|1889
8ZFI|1|b|A|1890
8ZFI|1|b|G|1891

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain X

Transfer RNA; tRNA