IL_8ZFI_147
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 8ZFI|1|b|A|1938, 8ZFI|1|b|U|1944, 8ZFI|1|b|U|1963
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFI_147 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1607
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
8ZFI|1|b|C|1934
8ZFI|1|b|G|1935
8ZFI|1|b|A|1936
8ZFI|1|b|A|1937
8ZFI|1|b|A|1938
8ZFI|1|b|U|1939
8ZFI|1|b|U|1940
8ZFI|1|b|C|1941
8ZFI|1|b|C|1942
8ZFI|1|b|U|1943
8ZFI|1|b|U|1944
8ZFI|1|b|G|1945
*
8ZFI|1|b|C|1961
8ZFI|1|b|C|1962
8ZFI|1|b|U|1963
8ZFI|1|b|G|1964
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain Z
- Transfer RNA; tRNA
- Chain c
- 50S ribosomal protein L2
Coloring options: