IL_8ZFI_151

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

8ZFI|1|b|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_151 not in the Motif Atlas

Geometric match to IL_4V9F_075

Geometric discrepancy: 0.1327

The information below is about IL_4V9F_075

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

8ZFI|1|b|A|2070
8ZFI|1|b|A|2071
*
8ZFI|1|b|U|2438
8ZFI|1|b|A|2439
8ZFI|1|b|C|2440
8ZFI|1|b|U|2441

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2

Chain z

eRAP-NC