IL_8ZFI_171

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_171 not in the Motif Atlas

Geometric match to IL_4J50_001

Geometric discrepancy: 0.1436

The information below is about IL_4J50_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8ZFI|1|b|A|2589
8ZFI|1|b|A|2590
8ZFI|1|b|C|2591
*
8ZFI|1|b|G|2603
8ZFI|1|b|U|2604
8ZFI|1|b|U|2605

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2