IL_8ZFI_180
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUAAG*CGAAAC
- Length
- 12 nucleotides
- Bulged bases
- 8ZFI|1|b|A|2765
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFI_180 not in the Motif Atlas
- Geometric match to IL_5J7L_350
- Geometric discrepancy: 0.0858
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8ZFI|1|b|G|2737
8ZFI|1|b|A|2738
8ZFI|1|b|U|2739
8ZFI|1|b|A|2740
8ZFI|1|b|A|2741
8ZFI|1|b|G|2742
*
8ZFI|1|b|C|2762
8ZFI|1|b|G|2763
8ZFI|1|b|A|2764
8ZFI|1|b|A|2765
8ZFI|1|b|A|2766
8ZFI|1|b|C|2767
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain g
- 50S ribosomal protein L6
- Chain k
- 50S ribosomal protein L13
Coloring options: