IL_8ZGR_005
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_005 not in the Motif Atlas
- Homologous match to IL_8P9A_235
- Geometric discrepancy: 0.0665
- The information below is about IL_8P9A_235
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_53348.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8ZGR|1|LA|C|82
8ZGR|1|LA|U|83
8ZGR|1|LA|U|84
8ZGR|1|LA|A|85
8ZGR|1|LA|G|86
8ZGR|1|LA|U|87
8ZGR|1|LA|A|88
8ZGR|1|LA|A|89
*
8ZGR|1|LA|U|97
8ZGR|1|LA|G|98
8ZGR|1|LA|A|99
8ZGR|1|LA|A|100
8ZGR|1|LA|G|101
8ZGR|1|LA|C|102
8ZGR|1|LA|G|103
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain LS
- Large ribosomal subunit protein eL18A
- Chain Lc
- Large ribosomal subunit protein uL15
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