3D structure

PDB id
8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with A/A tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
AGAC*GUU
Length
7 nucleotides
Bulged bases
8ZGR|1|LA|A|338
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8ZGR_012 not in the Motif Atlas
Geometric match to IL_406D_006
Geometric discrepancy: 0.3145
The information below is about IL_406D_006
Detailed Annotation
Isolated cWH basepair
Broad Annotation
Isolated cWH basepair
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

8ZGR|1|LA|A|336
8ZGR|1|LA|G|337
8ZGR|1|LA|A|338
8ZGR|1|LA|C|339
*
8ZGR|1|LC|G|25
8ZGR|1|LC|U|26
8ZGR|1|LC|U|27

Current chains

Chain LA
25S rRNA (3393-MER)
Chain LC
5.8S rRNA (158-MER)

Nearby chains

Chain LF
Large ribosomal subunit protein uL4A
Chain LN
Large ribosomal subunit protein eL13A
Chain La
Large ribosomal subunit protein uL24A

Coloring options:


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