IL_8ZGR_012
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAC*GUU
- Length
- 7 nucleotides
- Bulged bases
- 8ZGR|1|LA|A|338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_012 not in the Motif Atlas
- Geometric match to IL_406D_006
- Geometric discrepancy: 0.3145
- The information below is about IL_406D_006
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- Isolated cWH basepair
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8ZGR|1|LA|A|336
8ZGR|1|LA|G|337
8ZGR|1|LA|A|338
8ZGR|1|LA|C|339
*
8ZGR|1|LC|G|25
8ZGR|1|LC|U|26
8ZGR|1|LC|U|27
Current chains
- Chain LA
- 25S rRNA (3393-MER)
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain La
- Large ribosomal subunit protein uL24A
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