IL_8ZGR_014
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_014 not in the Motif Atlas
- Homologous match to IL_8CRE_016
- Geometric discrepancy: 0.0823
- The information below is about IL_8CRE_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8ZGR|1|LA|G|404
8ZGR|1|LA|U|405
8ZGR|1|LA|G|406
8ZGR|1|LA|A|407
8ZGR|1|LA|A|408
8ZGR|1|LA|A|409
8ZGR|1|LA|U|410
*
8ZGR|1|LC|A|13
8ZGR|1|LC|C|14
8ZGR|1|LC|G|15
8ZGR|1|LC|G|16
8ZGR|1|LC|A|17
8ZGR|1|LC|U|18
8ZGR|1|LC|C|19
Current chains
- Chain LA
- 25S rRNA (3393-MER)
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LR
- Large ribosomal subunit protein uL22A
- Chain Lg
- Large ribosomal subunit protein eL32
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