IL_8ZGR_026
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUGAUG*CGGAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_026 not in the Motif Atlas
- Geometric match to IL_8P9A_410
- Geometric discrepancy: 0.3767
- The information below is about IL_8P9A_410
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57885.2
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8ZGR|1|LA|C|757
8ZGR|1|LA|U|758
8ZGR|1|LA|G|759
8ZGR|1|LA|A|760
8ZGR|1|LA|U|761
8ZGR|1|LA|G|762
*
8ZGR|1|LA|C|767
8ZGR|1|LA|G|768
8ZGR|1|LA|G|769
8ZGR|1|LA|A|770
8ZGR|1|LA|U|771
8ZGR|1|LA|G|772
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Lq
- Large ribosomal subunit protein eL42A
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