IL_8ZGR_034
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_034 not in the Motif Atlas
- Homologous match to IL_8CRE_037
- Geometric discrepancy: 0.0465
- The information below is about IL_8CRE_037
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_28037.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
8ZGR|1|LA|U|953
8ZGR|1|LA|U|954
8ZGR|1|LA|U|955
*
8ZGR|1|LA|A|964
8ZGR|1|LA|U|965
8ZGR|1|LA|A|966
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LS
- Large ribosomal subunit protein eL18A
- Chain LV
- Large ribosomal subunit protein eL21A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Ld
- Large ribosomal subunit protein eL29
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