IL_8ZGR_036

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_036 not in the Motif Atlas

Geometric match to IL_8P9A_442

Geometric discrepancy: 0.206

The information below is about IL_8P9A_442

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

8ZGR|1|LA|A|971
8ZGR|1|LA|A|972
8ZGR|1|LA|G|973
*
8ZGR|1|LA|C|1106
8ZGR|1|LA|U|1107
8ZGR|1|LA|U|1108

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LS

Large ribosomal subunit protein eL18A

Chain Lc

Large ribosomal subunit protein uL15

Chain Ld

Large ribosomal subunit protein eL29