IL_8ZGR_037

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUCGUAUC*GAAGAG

Length

14 nucleotides

Bulged bases

8ZGR|1|LA|G|977, 8ZGR|1|LA|U|978, 8ZGR|1|LA|U|980, 8ZGR|1|LA|A|1102, 8ZGR|1|LA|G|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGR|1|LA|C|974
8ZGR|1|LA|U|975
8ZGR|1|LA|C|976
8ZGR|1|LA|G|977
8ZGR|1|LA|U|978
8ZGR|1|LA|A|979
8ZGR|1|LA|U|980
8ZGR|1|LA|C|981
*
8ZGR|1|LA|G|1100
8ZGR|1|LA|A|1101
8ZGR|1|LA|A|1102
8ZGR|1|LA|G|1103
8ZGR|1|LA|A|1104
8ZGR|1|LA|G|1105

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LI

Large ribosomal subunit protein uL30A

Chain LS

Large ribosomal subunit protein eL18A

Chain Ld

Large ribosomal subunit protein eL29