IL_8ZGR_051

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUAC*GUU

Length

7 nucleotides

Bulged bases

8ZGR|1|LA|U|1180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_051 not in the Motif Atlas

Geometric match to IL_4WF9_121

Geometric discrepancy: 0.3949

The information below is about IL_4WF9_121

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8ZGR|1|LA|A|1179
8ZGR|1|LA|U|1180
8ZGR|1|LA|A|1181
8ZGR|1|LA|C|1182
*
8ZGR|1|LA|G|1322
8ZGR|1|LA|U|1323
8ZGR|1|LA|U|1324

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LI

Large ribosomal subunit protein uL30A

Chain LO

Large ribosomal subunit protein eL14A

Chain LQ

Large ribosomal subunit protein uL13A

Chain LU

Large ribosomal subunit protein eL20A

Chain Lh

Large ribosomal subunit protein eL33A