IL_8ZGR_055

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUCAUCUAGACAG*CCGAAUGAAC

Length

24 nucleotides

Bulged bases

8ZGR|1|LA|A|1216, 8ZGR|1|LA|U|1217, 8ZGR|1|LA|C|1218, 8ZGR|1|LA|A|1220, 8ZGR|1|LA|C|1283, 8ZGR|1|LA|G|1284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGR|1|LA|G|1212
8ZGR|1|LA|U|1213
8ZGR|1|LA|U|1214
8ZGR|1|LA|C|1215
8ZGR|1|LA|A|1216
8ZGR|1|LA|U|1217
8ZGR|1|LA|C|1218
8ZGR|1|LA|U|1219
8ZGR|1|LA|A|1220
8ZGR|1|LA|G|1221
8ZGR|1|LA|A|1222
8ZGR|1|LA|C|1223
8ZGR|1|LA|A|1224
8ZGR|1|LA|G|1225
*
8ZGR|1|LA|C|1282
8ZGR|1|LA|C|1283
8ZGR|1|LA|G|1284
8ZGR|1|LA|A|1285
8ZGR|1|LA|A|1286
8ZGR|1|LA|U|1287
8ZGR|1|LA|G|1288
8ZGR|1|LA|A|1289
8ZGR|1|LA|A|1290
8ZGR|1|LA|C|1291

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LK

Large ribosomal subunit protein uL6A

Chain LL

Large ribosomal subunit protein uL16

Chain LU

Large ribosomal subunit protein eL20A

Chain Lo

Large ribosomal subunit protein eL40A