IL_8ZGR_061
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAG*CG
- Length
- 5 nucleotides
- Bulged bases
- 8ZGR|1|LA|A|1398
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_061 not in the Motif Atlas
- Homologous match to IL_8P9A_288
- Geometric discrepancy: 0.1748
- The information below is about IL_8P9A_288
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 134
Unit IDs
8ZGR|1|LA|U|1397
8ZGR|1|LA|A|1398
8ZGR|1|LA|G|1399
*
8ZGR|1|LA|C|1410
8ZGR|1|LA|G|1411
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Lg
- Large ribosomal subunit protein eL32
Coloring options: