IL_8ZGR_070

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_070 not in the Motif Atlas

Homologous match to IL_8CRE_073

Geometric discrepancy: 0.0801

The information below is about IL_8CRE_073

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8ZGR|1|LA|G|1660
8ZGR|1|LA|G|1661
8ZGR|1|LA|C|1662
*
8ZGR|1|LA|G|1785
8ZGR|1|LA|A|1786
8ZGR|1|LA|C|1787

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain Li

Large ribosomal subunit protein eL34A

Chain Lr

Large ribosomal subunit protein eL43A