IL_8ZGR_071

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8ZGR|1|LA|C|1778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_071 not in the Motif Atlas

Homologous match to IL_8P9A_297

Geometric discrepancy: 0.0554

The information below is about IL_8P9A_297

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8ZGR|1|LA|C|1668
8ZGR|1|LA|C|1669
*
8ZGR|1|LA|G|1777
8ZGR|1|LA|C|1778
8ZGR|1|LA|G|1779

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain Li

Large ribosomal subunit protein eL34A