IL_8ZGR_073

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

8ZGR|1|LA|G|1750

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_073 not in the Motif Atlas

Homologous match to IL_8P9A_299

Geometric discrepancy: 0.0818

The information below is about IL_8P9A_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8ZGR|1|LA|U|1693
8ZGR|1|LA|U|1694
8ZGR|1|LA|A|1695
8ZGR|1|LA|A|1696
8ZGR|1|LA|C|1697
*
8ZGR|1|LA|G|1746
8ZGR|1|LA|G|1747
8ZGR|1|LA|A|1748
8ZGR|1|LA|A|1749
8ZGR|1|LA|G|1750
8ZGR|1|LA|A|1751

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Li

Large ribosomal subunit protein eL34A

Chain Lm

Large ribosomal subunit protein eL38