IL_8ZGR_085

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAU*AUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_085 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2254

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8ZGR|1|LA|G|2123
8ZGR|1|LA|A|2124
8ZGR|1|LA|A|2125
8ZGR|1|LA|U|2126
*
8ZGR|1|LA|A|2325
8ZGR|1|LA|U|2326
8ZGR|1|LA|U|2327
8ZGR|1|LA|C|2328

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lp

Large ribosomal subunit protein eL41A

Chain S2

Small subunit ribosomal RNA; SSU rRNA