IL_8ZGR_092

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8ZGR|1|LA|A|2280, 8ZGR|1|LA|C|2286, 8ZGR|1|LA|C|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_092 not in the Motif Atlas

Homologous match to IL_8CRE_095

Geometric discrepancy: 0.0534

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

8ZGR|1|LA|C|2276
8ZGR|1|LA|C|2277
8ZGR|1|LA|A|2278
8ZGR|1|LA|A|2279
8ZGR|1|LA|A|2280
8ZGR|1|LA|U|2281
8ZGR|1|LA|G|2282
8ZGR|1|LA|C|2283
8ZGR|1|LA|C|2284
8ZGR|1|LA|U|2285
8ZGR|1|LA|C|2286
8ZGR|1|LA|G|2287
*
8ZGR|1|LA|C|2303
8ZGR|1|LA|G|2304
8ZGR|1|LA|C|2305
8ZGR|1|LA|G|2306

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lp

Large ribosomal subunit protein eL41A

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Ta

Transfer RNA; tRNA