IL_8ZGR_097

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8ZGR|1|LA|G|2605

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_097 not in the Motif Atlas

Homologous match to IL_8CRE_100

Geometric discrepancy: 0.068

The information below is about IL_8CRE_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8ZGR|1|LA|U|2422
8ZGR|1|LA|A|2423
8ZGR|1|LA|G|2424
*
8ZGR|1|LA|U|2603
8ZGR|1|LA|G|2604
8ZGR|1|LA|G|2605
8ZGR|1|LA|G|2606

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain LP

Large ribosomal subunit protein eL15A

Chain Lq

Large ribosomal subunit protein eL42A