IL_8ZGR_111

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8ZGR|1|LA|A|2940, 8ZGR|1|LA|C|2941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_111 not in the Motif Atlas

Homologous match to IL_8P9A_336

Geometric discrepancy: 0.064

The information below is about IL_8P9A_336

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

8ZGR|1|LA|C|2880
8ZGR|1|LA|U|2881
*
8ZGR|1|LA|A|2939
8ZGR|1|LA|A|2940
8ZGR|1|LA|C|2941
8ZGR|1|LA|G|2942

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LX

Large ribosomal subunit protein uL14A

Chain Ta

Transfer RNA; tRNA