IL_8ZGR_119
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- 8ZGR|1|LA|A|3034
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_119 not in the Motif Atlas
- Homologous match to IL_8CRE_125
- Geometric discrepancy: 0.3838
- The information below is about IL_8CRE_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8ZGR|1|LA|C|3017
8ZGR|1|LA|U|3018
8ZGR|1|LA|U|3019
8ZGR|1|LA|A|3020
8ZGR|1|LA|G|3021
8ZGR|1|LA|U|3022
8ZGR|1|LA|A|3023
8ZGR|1|LA|C|3024
*
8ZGR|1|LA|G|3029
8ZGR|1|LA|G|3030
8ZGR|1|LA|A|3031
8ZGR|1|LA|A|3032
8ZGR|1|LA|C|3033
8ZGR|1|LA|A|3034
8ZGR|1|LA|G|3035
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LE
- Large ribosomal subunit protein uL3
- Chain LK
- Large ribosomal subunit protein uL6A
- Chain LX
- Large ribosomal subunit protein uL14A
- Chain Lo
- Large ribosomal subunit protein eL40A
Coloring options: