IL_8ZGR_131

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_131 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3072

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8ZGR|1|LA|C|3234
8ZGR|1|LA|U|3235
8ZGR|1|LA|U|3236
8ZGR|1|LA|G|3237
*
8ZGR|1|LA|C|3248
8ZGR|1|LA|U|3249
8ZGR|1|LA|U|3250
8ZGR|1|LA|G|3251

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LQ

Large ribosomal subunit protein uL13A