IL_8ZGR_139

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGCC*GUUGUU

Length

10 nucleotides

Bulged bases

8ZGR|1|LA|C|3348, 8ZGR|1|LA|U|3353, 8ZGR|1|LA|U|3354

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGR|1|LA|A|3346
8ZGR|1|LA|G|3347
8ZGR|1|LA|C|3348
8ZGR|1|LA|C|3349
*
8ZGR|1|LA|G|3352
8ZGR|1|LA|U|3353
8ZGR|1|LA|U|3354
8ZGR|1|LA|G|3355
8ZGR|1|LA|U|3356
8ZGR|1|LA|U|3357

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LW

Large ribosomal subunit protein eL22A

Chain SV

Small ribosomal subunit protein eS8A