IL_8ZGR_147

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

8ZGR|1|LC|G|95

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_147 not in the Motif Atlas

Homologous match to IL_8P9A_371

Geometric discrepancy: 0.1007

The information below is about IL_8P9A_371

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

8ZGR|1|LC|U|64
8ZGR|1|LC|A|65
8ZGR|1|LC|A|66
*
8ZGR|1|LC|U|93
8ZGR|1|LC|C|94
8ZGR|1|LC|G|95
8ZGR|1|LC|A|96

Current chains

Chain LC

5.8S rRNA (158-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain La

Large ribosomal subunit protein uL24A

Chain Lj

Large ribosomal subunit protein uL29A

Chain Ll

Large ribosomal subunit protein eL37A