IL_8ZGR_148
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GU*AUC
- Length
- 5 nucleotides
- Bulged bases
- 8ZGR|1|LC|U|90
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_148 not in the Motif Atlas
- Homologous match to IL_8P9A_372
- Geometric discrepancy: 0.1204
- The information below is about IL_8P9A_372
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 129
Unit IDs
8ZGR|1|LC|G|68
8ZGR|1|LC|U|69
*
8ZGR|1|LC|A|89
8ZGR|1|LC|U|90
8ZGR|1|LC|C|91
Current chains
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain La
- Large ribosomal subunit protein uL24A
- Chain Lj
- Large ribosomal subunit protein uL29A
- Chain Ln
- Large ribosomal subunit protein eL39
Coloring options: