IL_8ZGR_164
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 8ZGR|1|S2|U|319, 8ZGR|1|S2|U|320, 8ZGR|1|S2|C|321, 8ZGR|1|S2|G|322
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_164 not in the Motif Atlas
- Geometric match to IL_6JXM_001
- Geometric discrepancy: 0.3266
- The information below is about IL_6JXM_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_84476.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
8ZGR|1|S2|U|318
8ZGR|1|S2|U|319
8ZGR|1|S2|U|320
8ZGR|1|S2|C|321
8ZGR|1|S2|G|322
8ZGR|1|S2|A|323
*
8ZGR|1|S2|U|345
8ZGR|1|S2|G|346
Current chains
- Chain S2
- chain 2 18S rRNA (1800-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LT
- Large ribosomal subunit protein eL19A
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain SX
- Small ribosomal subunit protein uS17A
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