IL_8ZGR_175
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_175 not in the Motif Atlas
- Geometric match to IL_8P9A_277
- Geometric discrepancy: 0.3188
- The information below is about IL_8P9A_277
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_07396.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 3
Unit IDs
8ZGR|1|S2|A|550
8ZGR|1|S2|G|551
8ZGR|1|S2|G|552
8ZGR|1|S2|G|553
8ZGR|1|S2|C|554
8ZGR|1|S2|A|555
8ZGR|1|S2|A|556
8ZGR|1|S2|G|557
*
8ZGR|1|S2|C|587
8ZGR|1|S2|U|588
Current chains
- Chain S2
- chain 2 18S rRNA (1800-MER)
Nearby chains
- Chain SR
- Small ribosomal subunit protein uS5
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain Sg
- Small ribosomal subunit protein eS30A
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