IL_8ZGR_187

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_187 not in the Motif Atlas

Geometric match to IL_8CRE_433

Geometric discrepancy: 0.2913

The information below is about IL_8CRE_433

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8ZGR|1|S2|G|871
8ZGR|1|S2|G|872
8ZGR|1|S2|U|873
8ZGR|1|S2|C|874
*
8ZGR|1|S2|G|953
8ZGR|1|S2|G|954
8ZGR|1|S2|A|955
8ZGR|1|S2|C|956

Current chains

Chain S2

chain 2 18S rRNA (1800-MER)

Nearby chains

Chain SQ

Small ribosomal subunit protein eS1A

Chain SY

Small ribosomal subunit protein uS15

Chain Sf

Small ribosomal subunit protein eS27A