IL_8ZGR_188
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 8ZGR|1|S2|G|876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_188 not in the Motif Atlas
- Geometric match to IL_8CRE_434
- Geometric discrepancy: 0.1325
- The information below is about IL_8CRE_434
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8ZGR|1|S2|C|874
8ZGR|1|S2|G|875
8ZGR|1|S2|G|876
8ZGR|1|S2|G|877
8ZGR|1|S2|G|878
*
8ZGR|1|S2|C|950
8ZGR|1|S2|A|951
8ZGR|1|S2|A|952
8ZGR|1|S2|G|953
Current chains
- Chain S2
- chain 2 18S rRNA (1800-MER)
Nearby chains
- Chain Le
- Large ribosomal subunit protein eL30
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain Se
- Small ribosomal subunit protein eS26B
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