IL_8ZGR_199

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8ZGR|1|S2|C|1158, 8ZGR|1|S2|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_199 not in the Motif Atlas

Geometric match to IL_9DFE_103

Geometric discrepancy: 0.3653

The information below is about IL_9DFE_103

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8ZGR|1|S2|A|1157
8ZGR|1|S2|C|1158
8ZGR|1|S2|C|1159
8ZGR|1|S2|A|1160
*
8ZGR|1|S2|U|1617
8ZGR|1|S2|C|1618
8ZGR|1|S2|C|1619
8ZGR|1|S2|C|1620
8ZGR|1|S2|U|1621

Current chains

Chain S2

chain 2 18S rRNA (1800-MER)

Nearby chains

Chain SB

Small ribosomal subunit protein uS7

Chain SF

Small ribosomal subunit protein uS9A

Chain SL

Small ribosomal subunit protein eS28A