IL_8ZGR_205

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8ZGR|1|S2|U|1269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_205 not in the Motif Atlas

Geometric match to IL_3NDB_005

Geometric discrepancy: 0.2999

The information below is about IL_3NDB_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8ZGR|1|S2|G|1268
8ZGR|1|S2|U|1269
8ZGR|1|S2|G|1270
*
8ZGR|1|S2|C|1440
8ZGR|1|S2|C|1441

Current chains

Chain S2

chain 2 18S rRNA (1800-MER)

Nearby chains

Chain SC

Small ribosomal subunit protein eS10A

Chain SM

Small ribosomal subunit protein uS14A

Chain Ta

Transfer RNA; tRNA