IL_8ZGR_209

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8ZGR|1|S2|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_209 not in the Motif Atlas

Geometric match to IL_8CRE_455

Geometric discrepancy: 0.2363

The information below is about IL_8CRE_455

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8ZGR|1|S2|C|1280
8ZGR|1|S2|G|1281
*
8ZGR|1|S2|C|1426
8ZGR|1|S2|A|1427
8ZGR|1|S2|G|1428

Current chains

Chain S2

chain 2 18S rRNA (1800-MER)

Nearby chains

Chain SA

Small ribosomal subunit protein uS3

Chain SF

Small ribosomal subunit protein uS9A

Chain SJ

Small ribosomal subunit protein uS10

Chain SM

Small ribosomal subunit protein uS14A

Chain SR

Small ribosomal subunit protein uS5

Chain Ta

Transfer RNA; tRNA