IL_8ZGR_210
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGG*CGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_210 not in the Motif Atlas
- Geometric match to IL_8P9A_442
- Geometric discrepancy: 0.1603
- The information below is about IL_8P9A_442
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
8ZGR|1|S2|U|1290
8ZGR|1|S2|G|1291
8ZGR|1|S2|G|1292
*
8ZGR|1|S2|C|1323
8ZGR|1|S2|G|1324
8ZGR|1|S2|A|1325
Current chains
- Chain S2
- chain 2 18S rRNA (1800-MER)
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SG
- Small ribosomal subunit protein eS17A
- Chain SP
- Small ribosomal subunit protein uS2A
- Chain SR
- Small ribosomal subunit protein uS5
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