IL_8ZGR_221
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_221 not in the Motif Atlas
- Geometric match to IL_8CRE_467
- Geometric discrepancy: 0.1346
- The information below is about IL_8CRE_467
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8ZGR|1|S2|G|1638
8ZGR|1|S2|C|1639
8ZGR|1|S2|C|1640
8ZGR|1|S2|C|1641
*
8ZGR|1|S2|G|1760
8ZGR|1|S2|U|1761
8ZGR|1|S2|A|1762
8ZGR|1|S2|A|1763
8ZGR|1|S2|C|1764
Current chains
- Chain S2
- chain 2 18S rRNA (1800-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lp
- Large ribosomal subunit protein eL41A
- Chain Ta
- Transfer RNA; tRNA
Coloring options: