IL_8ZGY_002

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

8ZGY|1|LA|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_002 not in the Motif Atlas

Homologous match to IL_8P9A_232

Geometric discrepancy: 0.0888

The information below is about IL_8P9A_232

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8ZGY|1|LA|A|13
8ZGY|1|LA|U|14
8ZGY|1|LA|C|15
*
8ZGY|1|LC|G|144
8ZGY|1|LC|U|145

Current chains

Chain LA

25S rRNA (3393-MER)

Chain LC

5.8S rRNA (158-MER)

Nearby chains

Chain LJ

Large ribosomal subunit protein eL8A

Chain LP

Large ribosomal subunit protein eL15A

Chain LZ

Large ribosomal subunit protein uL23