IL_8ZGY_007

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_007 not in the Motif Atlas

Homologous match to IL_8CRE_008

Geometric discrepancy: 0.0778

The information below is about IL_8CRE_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8ZGY|1|LA|C|125
8ZGY|1|LA|U|126
8ZGY|1|LA|G|127
*
8ZGY|1|LA|C|141
8ZGY|1|LA|C|142
8ZGY|1|LA|G|143

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LJ

Large ribosomal subunit protein eL8A

Chain LP

Large ribosomal subunit protein eL15A

Chain LZ

Large ribosomal subunit protein uL23

Chain Lj

Large ribosomal subunit protein uL29A