IL_8ZGY_012

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

8ZGY|1|LA|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_012 not in the Motif Atlas

Homologous match to IL_8CRE_014

Geometric discrepancy: 0.0852

The information below is about IL_8CRE_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8ZGY|1|LA|G|337
8ZGY|1|LA|A|338
8ZGY|1|LA|C|339
*
8ZGY|1|LC|G|25
8ZGY|1|LC|U|26

Current chains

Chain LA

25S rRNA (3393-MER)

Chain LC

5.8S rRNA (158-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL4A

Chain La

Large ribosomal subunit protein uL24A